Functions to load example data
epgs
Faecal egg count samples (before and after treatment)
Functions to simulate and to find priors
simData1s()
Simulate faecal egg count data (1-sample situation)
simData2s()
Simulate faecal egg count data (2-sample situation)
getPrior_delta()
Get prior parameters from Beta distribution
getPrior_mu()
Get prior parameters from Gamma distribution
Functions to analyze faecal egg counts
fecrtCI()
Compute standard FECRT according to WAAVP guidelines
fec_stan()
Modelling of faecal egg count data (one-sample case)
fecr_stan()
Model the reduction of faecal egg count
fecr_stanExtra()
Model the reduction of faecal egg count using custom models
fecr_stanSimple()
Model the reduction of faecal egg count using a simple Bayesian model
Functions to visualize and to diagnose
plotCounts()
Plot faecal egg count data
stan2mcmc()
Convert a Stanfit object to a MCMC object
fecr_probs()
Compute probability of the reduction parameter relative to a given threshold